Source code

Prediction of RNA editing events

Description

The string kernel is calculated base on a combination of edit distance and hamming distance D = w*Dedit + (1-w)*Dhamming where w is weight varying from 0 to 1

Example of train: svm-train [options] -t 5 -x 0.7 train.dat train.model

Example of test: svm-predict [options] test.dat train.model test.predict.rst

See more in README.string (included in the zip-file).

Compile:

Using GCC 4.2 or later, type make in path source located

Multi-core are supported. For 16 cores in bash, use
export OMP_NUM_THREADS=16 before training or learning.

Last updated: January 29, 2014
Website contact: LUDC webteam

LUDC, CRC, SUS Malmö, Entrance 72, House 91:12. SE-205 02 Malmö. Telephone: +46 40 39 10 00